PUBLICATIONS


1: A Stress Response that Monitors and Regulates mRNA Structure Is Central to Cold Shock Adaptation. Zhang Y, Burkhardt DH, Rouskin S, Li GW, Weissman JS, Gross CA. Mol Cell. 2018 Apr 19;70(2):274-286.e7. 


2: Operon mRNAs are organized into ORF-centric structures that predict translation efficiency. Burkhardt DH, Rouskin S, Zhang Y, Li GW, Weissman JS, Gross CA. Elife. 2017 Jan 31;6. pii: e22037.


3: DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo. Zubradt M, Gupta P, Persad S, Lambowitz AM, Weissman JS, Rouskin S. Nat Methods. 2017 Jan;14(1):75-82. 


4: Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo. Rouskin S, Zubradt M, Washietl S, Kellis M, Weissman JS. Nature. 2014 Jan 30;505(7485):701-5.


5: Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation. Pop C, Rouskin S, Ingolia NT, Han L, Phizicky EM, Weissman JS, Koller D. Mol Syst Biol. 2014 Dec 23;10:770. 


6: Genome-wide annotation and quantitation of translation by ribosome profiling. Ingolia NT, Brar GA, Rouskin S, McGeachy AM, Weissman JS. Curr Protoc Mol Biol. 2013 Jul;Chapter 4:Unit 4.18.


7:  A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress. Brandman O, Stewart-Ornstein J, Wong D, Larson A, Williams CC, Li GW, Zhou S, King D, Shen PS, Weibezahn J, Dunn JG, Rouskin S, Inada T, Frost A, Weissman JS. Cell. 2012 Nov 21;151(5):1042-54. 


8: The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments. Ingolia NT, Brar GA, Rouskin S, McGeachy AM, Weissman JS. Nat Protoc. 2012 Jul 26;7(8):1534-50.


9: Utility of DNA microarrays for detection of viruses in acute respiratory tract infections in children. Chiu CY, Urisman A, Greenhow TL, Rouskin S, Yagi S, Schnurr D, Wright C, Drew WL, Wang D, Weintrub PS, Derisi JL, Ganem D. J Pediatr. 2008 Jul;153(1):76-83. 


10: Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity. Kistler A, Avila PC, Rouskin S, Wang D, Ward T, Yagi S, Schnurr D, Ganem D, DeRisi JL, Boushey HA. J Infect Dis. 2007 Sep 15;196(6):817-25. 


11: Diagnosis of a critical respiratory illness caused by human metapneumovirus by use of a pan-virus microarray. Chiu CY, Alizadeh AA, Rouskin S, Merker JD, Yeh E, Yagi S, Schnurr D, Patterson BK, Ganem D, DeRisi JL. J Clin Microbiol. 2007 Jul;45(7):2340-3. 


12: Genome-wide diversity and selective pressure in the human rhinovirus. Kistler AL, Webster DR, Rouskin S, Magrini V, Credle JJ, Schnurr DP, Boushey HA, Mardis ER, Li H, DeRisi JL. Virol J. 2007 May 3;4:40. 


13: Microarray detection of human parainfluenzavirus 4 infection associated with respiratory failure in an immunocompetent adult. Chiu CY, Rouskin S, Koshy A, Urisman A, Fischer K, Yagi S, Schnurr D, Eckburg PB, Tompkins LS, Blackburn BG, Merker JD, Patterson BK, Ganem D, DeRisi JL. Clin Infect Dis. 2006 Oct 15;43(8):e71-6.